Record: 10 - 6 (pythagorean: 10 - 6, .656)
Coaching: Bill Walsh 10 - 6 (playoffs:3 - 0)
1988 Pro Bowl Players: FB - Roger Craig WR - Jerry Rice WR - John Taylor NT - Michael Carter LB - Charles Haley CB - Ronnie Lott
| Round - Pick (Overall Pick) 2-6 (33) - Daniel Stubbs, Miami (FL), DE 2-12 (39) - Pierce Holt, Angelo State, DT 3-25 (80) - Bill Romanowski, Boston College, LB 4-20 (102) - Barry Helton, Colorado, P 7-26 (191) - Kevin Bryant, Delaware State, LB 8-26 (219) - Larry Clarkson, Montana, T 9-26 (247) - Brian Bonner, Minnesota, LB 10-26 (275) - Tim Foley, Georgia Southern, K 11-26 (303) - Chet Brooks, Texas A&M, DB 12-26 (331) - Georga Mira Jr., Miami (FL), LB
|